PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0066s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 426aa    MW: 47290.4 Da    PI: 7.6619
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0066s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.4e-32117221199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Kalax.0066s0010.1.p 117 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDLTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 206
                          89****************************66677899*************************************************665 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+ ++ +l++ ++r+
  Kalax.0066s0010.1.p 207 GEaDKHRLFIDWRRR 221
                          888999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-41111222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29114219IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-25115204No hitNo description
PfamPF023625.1E-29117221IPR003340B3 DNA binding domain
SMARTSM010191.0E-22117222IPR003340B3 DNA binding domain
PROSITE profilePS5086314.325117222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEYGSNSQEF DHSIHQDFRA SGNEIYPSGS SRDWFAAASN RFAAADDRSD LMEASPPAAA  60
NENDYDHEHV RRVSDSHHHH HHHHHQMQQQ QQHYAQQQTL GIGIGGQICN IEREHMFDKV  120
VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN EKGLLLNFED LTGKPWRFRY SYWNSSQSYV  180
MTKGWSRFVK EKKLDAGDIV SFQRGVGEAD KHRLFIDWRR RPITTLPFDG SPFLHSHFYR  240
SAGGNIPSWS PLLLRPPPSR VHPSINFQIP NQHHPSSNYY STGYSGGGGN YMGQVVSNNA  300
SVVYFTSPEG IGMVRGRAGG GAGETIPVVF ESVPVVQGKK VAAAAKRLRL FGVNMECPVS  360
SDTSTSTENE FEILSSSSGI PVNGTTLSQQ YPSSSTLFLP SSTRMYNGTP VSNKGKTSMS  420
LDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4611423011126DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439872.11e-108PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_012439873.11e-108PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-78NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0D2Q2161e-108A0A0D2Q216_G
STRINGVIT_02s0025g03000.t012e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-66B3 family protein